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Showing posts with the label Snakemake

Snakemake Workflow On Split Files

Perhaps this question has already been answered but I could not come up with the correct query to f… Read more Snakemake Workflow On Split Files

Specifying Python Version Within Snakemake Using Script Parameter

I have some code that I am incorporating into a Snakemake pipeline. I also want to be able to run t… Read more Specifying Python Version Within Snakemake Using Script Parameter

How To Use Expand In Snakemake When Some Particular Combinations Of Wildcards Are Not Desired?

Let's suppose that I have the following files, on which I want to apply some processing automat… Read more How To Use Expand In Snakemake When Some Particular Combinations Of Wildcards Are Not Desired?

Snakemake - Problem Trying To Use Global_wildcards (TypeError: Expected Str, Got List)

I'm a newbie using Snakemake and not an expert in Python neither so the answer might be quite o… Read more Snakemake - Problem Trying To Use Global_wildcards (TypeError: Expected Str, Got List)

How To Do A Partial Expand In Snakemake?

I'm trying to first generate 4 files, for the LETTERS x NUMS combinations, then summarize over … Read more How To Do A Partial Expand In Snakemake?

Specifying Python Version Within Snakemake Using Script Parameter

I have some code that I am incorporating into a Snakemake pipeline. I also want to be able to run t… Read more Specifying Python Version Within Snakemake Using Script Parameter